List of files V4.0

/.htaccess
/apple-touch-icon.png
/e.php (optional contact page)
/favicon.ico
/htaccess.txt
/html-examples.html
/index.php
/preview.php
/readme.txt
/robots.txt
/s.php (optional search page)
/admin/ (folder)
    /admin/.htaccess
    /admin/backup.php
    /admin/comments.php
    /admin/extras.php
    /admin/footer.php
    /admin/functions.php
    /admin/htaccess.php
    /admin/images.php
    /admin/index.php
    /admin/install.php
    /admin/language.php
    /admin/list.php
    /admin/login-form.php
    /admin/markup.html
    /admin/nav.php
    /admin/password-sample.php
    /admin/setup.php
    /admin/stopwords.php
    /admin/stylesheet-unminified.css
    /admin/stylesheet.css
    /admin/test.php
    /admin/top.php
    /admin/upload.php
    /admin/video.php
    /admin/img/ (folder)
        /admin/img/bg-footer.gif
        /admin/img/img-loading.gif
        /admin/img/index.php
        /admin/img/nav-icon.jpg
    /admin/text/ (folder)
        /admin/text/count.txt
        /admin/text/extra-css.txt
        /admin/text/index.txt
        /admin/text/inmenu.txt
        /admin/text/listhits.txt
        /admin/text/pageid.txt
        /admin/text/password.txt
        /admin/text/since.txt
        /admin/text/stylesheet.txt
        /admin/text/tempcount.txt
        /admin/text/tempcountreset.txt
    /admin/visits/ (folder)
        /admin/text/counts.php
        /admin/text/delete.php
        /admin/text/index.php
        /admin/text/list.php
        /admin/text/stylesheet.css
        /admin/text/top.php
/comments/ (folder)
    /comments/index.php
    /comments/index.txt
/css/ (folder)
    /css/common-g.css
    /css/common-h.css
    /css/default.css (default desktop theme minified)
    /css/default-unminified.css
    /css/mobile.css
/css-unminified/
    /css/mobile-unminified.css
    /css/normalize-unminified.css
    /css/print-unminified.css
/diagnostics/ (folder)
    /diagnostics/index.php
    /diagnostics/stylesheet.css
/fonts/ (folder)
Various .woof and .woof2 font files from Google Fonts
/img/ (folder)
    /img/.htaccess
    /img/bg-footer.gif
    /img/bg_footer_monochrome.gif
    /img/bg-dots.gif
    /img/example-image.jpg
    /img/index.php
    /img/loader.gif
    /img/og.jpg
/inc/ (folder)
    /inc/404.php
    /inc/content.php
    /inc/error-reporting.php
    /inc/extra-body.php
    /inc/extra-content.php
    /inc/extra-head.php
    /inc/filter-email.php (new)
    /inc/footer.php
    /inc/form.php
    /inc/functions.php
    /inc/html.php
    /inc/index.php
    /inc/lang.php
    /inc/login-form.php
    /inc/logout-form.php
    /inc/menu.php
    /inc/ppp.php
    /inc/prelims.php (for e.php and s.php)
    /inc/stylesheets.php
    /inc/top.php
    /inc/tracking.php
    /inc/languages/ (folder)
        /inc/languages/de.php
        /inc/languages/en.php
        /inc/languages/fr.php
        /inc/languages/es.php
/js/ (folder)
    /js/modal-img.js
    /js/simpleToggle.js
    /js/slides.js
/pages/ (folder)
    /pages/html-examples.txt
    /pages/preview.txt
/uploads/ (folder)
    /uploads/.htaccess
    /uploads/index.php
/video/ (folder)
    /video/index.php

Other files are written during installation.